Aminoacylation of hypomodified tRNA(Glu) in vivo

The highly specific interaction of each aminoacyl-tRNA synthetase and its s ubstrate tRNAs constitutes an intriguing problem in protein-RNA recognition . All tRNAs have the same overall three-dimensional structure in order to f it interchangeably into the translational apparatus. Thus, the recognition by aminoacyl-tRNA synthetase must be more or less limited to discrimination between bases at specific positions within the tRNA. The hypermodified nuc leotide 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) present at the wobb le position of bacterial tRNAs specific for glutamic acid, lysine and possi bly glutamine has been shown to be important in the recognition of these tR NAs by their synthetases in vitro. Here, we have determined the aminoacylat ion level in vivo of tRNA(Glu), tRNA(Lys), and tRNA(1)(Gln) in Escherichia coli strains containing undermodified derivatives of mnm(5)s(2)U34. Lack of the 5-methylaminomethyl group did not reduce charging levels for any of th e three tRNAs. Lack of the s(2)U34 modification caused a 40% reduction in t he charging level of tRNA(Glu). Charging of tRNA(Lys) and tRNA(1)(Gln) were less affected. There was no compensating regulation of expression of gluta myl-tRNA synthetase because the relative synthesis rate was the same in the wild-type and mutant strains. These results indicate that the mnm(5)U34 mo dification is not an important recognition element in vivo for the glutamyl -tRNA synthetase. In contrast, lack of the s(2)U34 modification reduced the efficiency of charging by at least 40%. This is the minimal estimate becau se the turn-over rate of Glu-tRNA(Glu) was also reduced in the absence of t he 2-thio group. Lack of either modification did not affect mischarging or mistranslation. (C) 1998 Academic Press.