The determination of protein structures has furthered our understanding of
how various proteins perform their functions. With the large number of stru
ctures currently available in the PDB, it is necessary to be able to easily
study these proteins in detail. Here new software tools are presented whic
h aim to facilitate this analysis; these include the PDBsum WWW site which
provides a summary description of all PDB entries, the programs TOPS and NU
CPLOT to plot schematic diagrams representing protein topology and DNA-bind
ing interactions, SAS a WWW-based sequence-analysis tool incorporating stru
ctural data, and WWW servers for the analysis of protein-protein interfaces
and analyses of over 300 haem-binding proteins.