Several low palmitic acid mutants have been developed in soybean [Glycine m
ax (L.) Merr.] to improve oil. quality. Single locus mutations have been id
entified which control low palmitic acid: fap1 allele in C1726 and fap3 all
ele in A22. Each allele was found to be additively inherited at the intralo
cus level. There is less understanding of the inheritance of low palmitic a
cid controlled by alleles at more than one locus. The objectives of this st
udy were to: (i) determine the number of loci and type of gene action assoc
iated with the cross between two low palmitic lines, and (ii) propose a sim
ple calculation method that accounts for partial dominance at the intralocu
s level. Two independently developed low palmitic lines (ELLP2 and C1726) w
ere crossed. The analyses of F-2 and F-3 generations indicated that the com
bination of alleles at two loci (temporarily designated Fap* locus in ELLP2
and the previously described Fap1 locus in C1726) were controlling the tra
nsgressive segregation of palmitic acid. The Fap* allele was partially domi
nant over the mutant fap* allele in ELLP2. A simple calculation method was
proposed to account for the degree of dominance in order to explain and pre
dict the F-2 segregation in the ELLP2 x C1726 cross. The (ELLP2 x C1726) F-
2 seeds segregated into six distinct phenotypic groups that fit a 1:2:3:5:4
:1 ratio. The ratio corresponded well with the expected genetic pattern on
the basis of the gene substitution values. The results indicated the segreg
ation of two loci in the ELLP2 x C1726 cross: Fap* with partial dominance a
nd Fap1 with additive gene action, and no epistasis at the interlocus level
. Furthermore, the calculation based on gene substitution values may be use
d in predicting other complex segregation ratios.