The Southern Ocean is an extreme environment, where waters are permanently
cold, a seasonal ice cover extends over large areas, and the solar energy a
vailable for photosynthesis is severely restricted, either by vertical mixi
ng to considerable depths or, especially south of the Antarctic Circle, by
prolonged seasonal periods of low or no irradiance. Such conditions would n
ormally lead to low productivity and a water column dominated by recycling
processes involving microbial components of pelagic communities but this do
es not seem to be the case in the Southern Ocean, where there is efficient
export to large apex predators and deep waters. This paper investigates the
role of large microphagous zooplankton (salps, krill, and some large copep
ods) in the partitioning of biogenic carbon among the pools of short- and l
ong-lived organic carbon and sequestered biogenic carbon. Large microphagou
s zooplankton are able to ingest microbial-sized particles and thus repacka
ge small, non-sinking particles into both metazoan biomass and large, rapid
ly sinking faeces. Given the wide spatio-temporal extent of microbial troph
ic pathways in the Southern Ocean, large zooplankton that are omnivorous or
able to ingest small food particles have a competitive advantage over herb
ivorous zooplankton. Krill efficiently transfer carbon to a wide array of a
pex predators and their faecal pellets are exported to depth during occasio
nal brief sedimentation episodes in spring time. Salps may be a significant
link towards some fish (directly) and other apex predators (indirectly) an
d, at some locations (especially in offshore waters) and time, they may acc
ount for most of the downward flux of biogenic carbon. Large copepods are a
trophic link towards fish and at least one whale species, and their grazin
g activity generally impedes the export of organic particles to depth. As a
result, biogenic carbon is channelled mainly towards apex predators and ep
isodically into the deep ocean. Without these original interactions, Antarc
tic waters might well be dominated by microbial components and recycling pr
ocesses instead of active export from the generally small primary producers
towards large apex predators.