RNA replication for the paramyxovirus simian virus 5 requires an internal repeated (CGNNNN) sequence motif

A functional RNA replication promoter for the paramyxovirus simian virus 5 (SV5) requires two essential and discontinuous elements: 19 bases at the 3' terminus (conserved region I) and an 18-base internal region (conserved re gion II [CRII]) that is contained within the coding region of the L protein gene. A reverse-genetics system was used to determine the sequence require ments for the internal CRII element to function in RNA replication. A serie s of copyback defective interfering (DI) RNA analogs were constructed to co ntain point mutations in the 18 nucleotides composing CRII, and their relat ive replication levels were analyzed, The results indicated that SV5 DI RNA replication was reduced by substitutions for two CG dinucleotides, which i n the nucleocapsid template are in the first two positions of the first two hexamers of CRII nucleotides. Substitutions for other bases within CRII di d not reduce RNA synthesis, Thus, two consecutive 5'-CGNNNN-3' hexamers for m an important sequence in the SV5 CRII promoter element. The position of t he CG dinucleotide within the SV5 leader and antitrailer promoters was high ly conserved among other members of the Rubulavirus genus, but this motif d iffered significantly in both sequence and position from that previously id entified for Sendai virus. The possible roles of the CRII internal promoter element in paramyxovirus RNA replication are discussed.