Transposon Tn 1546 confers resistance to glycopeptide antibiotics in entero
cocci and encodes two D,D-peptidases (VanX and VanY) in addition to the enz
ymes for the synthesis of D-alanyl-D-lactate (D-Ala-D-Lac). VanY was produc
ed in the baculovirus expression system and purified as a proteolytic fragm
ent that lacked the putative N-terminal membrane anchor of the protein. The
enzyme was a Zn2+-dependent D,D-carboxypeptidase that cleaved the C-termin
al residue of peptidoglycan precursors ending in R-D-Ala-D-Ala or R-D-Ala-D
-Lac but not the dipeptide D-Ala-D-Ala. The specificity constants k(cat)/K-
m were 17- to 67-fold higher for substrates ending in the R-D-Ala-D-Ala tar
get of glycopeptides. In Enterococcus faecalis, VanY was present in membran
e and cytoplasmic fractions, produced UDP-MurNAc-tetrapeptide from cytoplas
mic peptidoglycan precursors and was required for high-level glycopeptide r
esistance in a medium supplemented with D-Ala. The enzyme could not replace
the VanX D,D-dipeptidase for the expression of glycopeptide resistance but
a G237D substitution in the host D-Ala:D-Ala ligase restored resistance in
a vanX null mutant. Deletion of the membrane anchor of VanY led to an acti
ve D,D-carboxypeptidase exclusively located in the cytoplasmic fraction tha
t did not contribute to glycopeptide resistance in a D-Ala-containing mediu
m. Thus, VanX and VanY had nonoverlapping functions involving the hydrolysi
s of D-Ala-D-Ala and the removal of D-Ala from membrane-bound lipid interme
diates respectively.