The Caenorhabditis elegans genome sequence was surveyed for transcription f
actor and signaling gene families that have been shown to regulate developm
ent in a variety of species. About 10 to 25 percent of the genes in most of
the gene families already have been genetically analyzed in C. elegans, ab
out half of the genes detect probable orthologs in other species, and about
10 to 25 percent of the genes are, at present, unique to C. elegans. Caeno
rhabditis elegans is also missing genes that are found in vertebrates and o
ther invertebrates. Thus the genome sequence reveals universals in developm
ental control that are the Legacy of metazoan complexity before the Cambria
n explosion, as well as genes that have been more recently invented or Lost
in particular phylogenetic lineages.