The inherited neurodegenerative diseases caused by an expanded glutamine re
peat share the pathologic feature of intranuclear aggregates or inclusions
(NI). Here in cell-based studies of the spinocerebellar ataxia type-3 disea
se protein, ataxin-3, we address two issues central to aggregation: the rol
e of polyglutamine in recruiting proteins into NI and the role of nuclear l
ocalization in promoting aggregation. We demonstrate that full-length ataxi
n-3 is readily recruited from the cytoplasm into NI seeded either by a path
ologic ataxin-3 fragment or by a second unrelated glutamine-repeat disease
protein, ataxin-3. Experiments with green fluorescence protein/polyglutamin
e fusion proteins show that a glutamine repeat is sufficient to recruit an
otherwise irrelevant protein into NI, and studies of human disease tissue a
nd a Drosophila transgenic model provide evidence that specific glutamine-r
epeat-containing proteins, including TATA-binding protein and Eyes Absent p
rotein, are recruited into NI in vivo. Finally, we show that nuclear locali
zation promotes aggregation: an ataxin-3 fragment containing a nonpathologi
c repeat of 27 glutamines forms inclusions only when targeted to the nucleu
s. Our findings establish the importance of the polyglutamine domain in med
iating recruitment and suggest that pathogenesis may be linked in part to t
he sequestering of glutamine-containing cellular proteins. In addition, we
demonstrate that the nuclear environment may be critical for seeding polygl
utamine aggregates.