Quasispecies nature of three maize streak virus isolates obtained through different modes of selection from a population used to assess response to infection of maize cultivars
M. Isnard et al., Quasispecies nature of three maize streak virus isolates obtained through different modes of selection from a population used to assess response to infection of maize cultivars, J GEN VIROL, 79, 1998, pp. 3091-3099
Three maize streak virus (MSV) isolates were derived from an MSV population
used to assess the response to infection of maize cultivars, Isolate SP1 w
as obtained from this population through short acquisition and inoculation
periods (1 and 5 min, respectively), using a single Cicadulina mbila vector
. Isolate SF2 was derived from SP1 after transmission to a wild perennial h
ost (Coix lacryma-jobi), on which it was maintained for about 4 years witho
ut insect transmission. Isolate N2A, the most pathogenic isolate, was obtai
ned from the initial population after serial passages on almost completely
resistant inbred maize lines. The complexity of each isolate was analysed b
y RFLP analysis and sequencing based on 120 SP1 clones, 36 SF2 clones and 4
0 N2A clones. All three isolates were composed of different but related clo
nes, consistent with a quasispecies structure. The mutations were distribut
ed throughout the genome. Mutation frequencies, based on all available sequ
ences, were 3.8 x 10(-4) for SP1, 10.5 x 10(-4) for SP2 and 6.9 x 10(-4) fo
r N2A. AS expected from the bottleneck selection step, the intra-isolate va
riability of SP1 was relatively low. Comparison between SP1 and SP2 showed
that SP1 heterogeneity increased during maintenance on the wild host. Furth
ermore, the consensus sequences of SP1 and SP2 differed by two non-synonymo
us substitutions in the complementary sense gene repA, N2A had a relatively
low degree of heterogeneity, but was composed of several sub-populations.
The results reflect the influence of the mode of selection of MSV isolates
on their quasispecies organization, i.e. distribution of variants, and mast
er sequence.