Th cells recognize protein Ags as short peptides bound to MHC class II mole
cules. Altered peptide ligands can antagonize (inhibit) T cell responses to
stimulatory peptides. Peptides generated by APC may contain peptide flanki
ng residues (PFR), which lie outside the minimal binding epitope and can be
recognized by the TCR Our data show that PFR-dependent T cells were found
to be potently antagonized by peptides that lack PFR and responded poorly t
o native protein or the immunogenic epitope delivered by a recombinant infl
uenza virus. These data provide the first evidence that Ag processing gener
ates both stimulatory and antagonist peptides from a single immunogenic epi
tope, an observation that may have important implications for T cell immuno
regulation and autoimmunity.