Repetitive transcranial magnetic stimulation (rTMS) is a noninvasive techni
que to induce electric currents in the brain. Although rTMS is being evalua
ted as a possible alternative to electroconvulsive therapy for the treatmen
t of refractory depression, little is known about the pattern of activation
induced in the brain by rTMS. We have compared immediate early gene expres
sion in rat brain after rTMS and electroconvulsive stimulation, a well-esta
blished animal model for electroconvulsive therapy. Our result shows that r
TMS applied in conditions effective in animal models of depression induces
different patterns of immediate-early gene expression than does electroconv
ulsive stimulation. In particular, rTMS evokes strong neural responses in t
he paraventricular nucleus of the thalamus (PVT) and in other regions invol
ved in the regulation of circadian rhythms. The response in PVT is independ
ent of the orientation of the stimulation probe relative to the head. Part
of this response is likely because of direct activation, as repetitive magn
etic stimulation also activates PVT neurons in brain slices.