Continued studies on the synthesis and atropisomerism of the vancomycin CD
and DE ring systems based on aromatic nucleophilic substitution macrocycliz
ation reactions for formation of the biaryl ethers are detailed in efforts
that further define substituent effects, explore the impact of protecting g
roups, and establish the stereochemical integrity of peripheral substituent
s. These have led to the identification of a previously unrecognized site o
f epimerization within our original approach to the DE ring system and the
introduction of significant improvements in the approach that will find uti
lization in syntheses of the vancomycin CDE ring system and of the natural
product itself. The preparation of a complete set of DE ring system isomers
bearing the unnatural stereochemistry at the labile C8, C11, and C14 sites
was accomplished for comparison and established that C8 is prone to epimer
ization to the more stable, unnatural S versus R absolute stereochemistry i
f it bears an ester, but not a carboxamide, substituent. Additionally, an i
mproved synthesis of the CD ring system, enlisting a C14 carboxamide versus
ester substituent, is disclosed and establishes the stereochemical integri
ty of our prior approach which incorporated a C14 ester. A set of fully fun
ctionalized CD and DE ring systems were prepared and include the developmen
t of conditions for the final deprotections required for incorporation into
efforts on the natural product. The examination of the antimicrobial activ
ity of these key substructures of vancomycin is detailed.