NMR relaxation measurements of backbone proton exchange in proteins permita distinction between different mechanisms of exchange

Citation
O. Jardetzky et Md. Finucane, NMR relaxation measurements of backbone proton exchange in proteins permita distinction between different mechanisms of exchange, MOLEC PHYS, 95(6), 1998, pp. 1127-1136
Citations number
29
Categorie Soggetti
Physical Chemistry/Chemical Physics
Journal title
MOLECULAR PHYSICS
ISSN journal
00268976 → ACNP
Volume
95
Issue
6
Year of publication
1998
Pages
1127 - 1136
Database
ISI
SICI code
0026-8976(199812)95:6<1127:NRMOBP>2.0.ZU;2-3
Abstract
The Linderstrom-Lang model describes proton exchange as proceeding from an 'open' state which is in equilibrium with a 'closed' state from which excha nge cannot occur. This predicts a biexponential exchange process, although limiting conditions can give rise to monoexponential exchange profiles. Whe n monoexponential exchange profiles are observed, insufficient information is present to define the exchange mechanism. We have directly observed a bi exponential exchange process, enabling us to distinguish between alternativ e amide proton exchange models. Our results are not compatible with the sta ndard local unfolding model, in which units of secondary structure open in a concerted fashion, with each of the newly exposed amide protons exchangin g at the same rate which they would in random coil peptides.