The haemoglobinopathies are the commonest single-gene disorders known, almo
st certainly because of the protection they provide against malaria, as att
ested by a number of observations. The geographical distributions of malari
a and haemoglobinopathies largely overlap, and microepidemiological surveys
confirm the close relationship between them. For two of the commonest diso
rders, haemoglobin S and alpha(+)-thalassaemia, there is also good clinical
evidence for protection against malaria morbidity. However, not all the ev
idence appears to support this view. In some parts of the world malaria and
haemoglobinopathies are not, and never have been, coexistent. It is also d
ifficult to explain why the majority of haemoglobinopathies appear to be re
cent mutations and are regionally specific. Here we argue that these appare
nt inconsistencies in the malaria hypothesis are the result of processes su
ch as genetic drift and migration and of demographic changes that have occu
rred during the past 10 000 years. When these factors are taken into accoun
t, selection by malaria remains the force responsible for the prevalence of
the haemoglobinopathies.