This paper describes a separation model in capillary electrophoresis (
CE) based on the entropy equation of nonequilibrium thermodynamics. We
first related Delta S, the mixed entropy change of the solute system,
to plate height (H) and Delta S-s, the contribution of Delta S only d
ue to the net separation process, to resolution (R-s) and resolution p
roduct (Pi R-s). In particular, we determined the entropy flow of the
solute system, which is composed of both energetic and material exchan
ge terms relating to capillary cooling and relative migrations among s
olute zones, respectively. It is just the CE separation system, as ext
erior surroundings, that contributes to the enhanced separation effici
ency. The more the CE system (except the solute system) provides the s
olute system with negative entropy flow, the better the separation eff
iciency of the CE system. We also determined six thermodynamic forces
and their thermodynamic fluxes corresponding to six irreversible proce
sses; heat conduction, four kinds of diffusion (electrical field, axia
l concentration gradient, electrophoretic dispersion and wall adsorpti
on) and viscous flow, respectively. Entropy production is thus compose
d of the six terms corresponding to time-dependent CE efficiency loss
factors. The bigger the entropy production, the greater the loss of se
paration efficiency. The objective functions were built based on the e
ntropy equation of solute systems developed between CE separation effi
ciency (Delta S-S) and the optimizing parameters (electrical strength,
coolant temperature; the composition and concentration of buffer; the
radius, length and wall adsorption of the capillary; the concentratio
n, charge, molecular weight and conformation of solutes; injection con
ditions, etc.). The more negative Delta S-s is, the better the separat
ion efficiency. This model was supported by the results of our experim
ents and data in the literature.