A three-dimensional image of the spinach photosystem II core complex compos
ed of CP47, D1, D2, cytochrome b-559, and psbI gene product was reconstruct
ed at 20-Angstrom resolution from the two-dimensional crystals negatively s
tained with phosphotungstate. Confirming the previous proposal, the crystal
had a p22(1)2(1) symmetry. One PSII core complex was measured to be 80 x 8
0 Angstrom in the membrane plane and 88 Angstrom normal to it. The mass dis
tribution was asymmetric about the lipid bilayer, consistent with predictio
ns from the amino acid sequences. The lumenal mass consisted of three domai
ns forming a characteristic triangular platform with another domain on top
of it. Three stromal domains were smaller and linearly arranged. Due to str
ong stain exclusion in the hydrophobic core part of the lipid bilayer, the
transmembrane region appeared to be imaged with a reversed contrast. Invert
ing the contrast resulted in a reasonable density distribution for that par
t. Thus, though the information on the transmembrane region is limited, the
domain structure of the PSII core complex was revealed and allowed us to p
ropose a model for the arrangement of subunits in the PSII core complex. (C
) 1998 Academic Press.