Pathways of proton entry have been identified in the proton-translocating h
eme-copper oxidases, but the proton exit pathway is unknown. Here we report
experiments with cytochrome bos in Escherichia coli cells that may identif
y the beginning of the exit pathway. Systematic mutations of arginines 438
and 439 (R481 and R482 in the E. coli enzyme), numbering as in cytochrome a
a(3) from bovine heart mitochondria, which interact with the ring D propion
ates of the two heme groups, reveal that the D propionate of the oxygen-bin
ding heme is involved in proton pumping; its anionic form must be stabilize
d in order for proton translocation to occur. This may locate the beginning
of the pathway by which pumped protons exit from the enzyme structure.