Simple conformation space search protocols for the evaluation of enantioselectivity of lipases

Citation
C. Orrenius et al., Simple conformation space search protocols for the evaluation of enantioselectivity of lipases, PROTEIN ENG, 11(12), 1998, pp. 1147-1153
Citations number
42
Categorie Soggetti
Biochemistry & Biophysics
Journal title
PROTEIN ENGINEERING
ISSN journal
02692139 → ACNP
Volume
11
Issue
12
Year of publication
1998
Pages
1147 - 1153
Database
ISI
SICI code
0269-2139(199812)11:12<1147:SCSSPF>2.0.ZU;2-L
Abstract
Two computational protocols have been evaluated regarding their ability to reproduce the enthalpic part of lipase enantioselectivity by forcefield pot ential energy differences (Delta V-R-S(#)). Though the shortcomings of the approach are numerous, good qualitative results have been obtained here and elsewhere. The anticipated improvement of quantitative results by use of a second protocol, which did not impose any atom movement restrictions on th e total system, was realized only in part. Seemingly, results depended not only on the design of the computational procedure but also on the enzyme-su bstrate combination modelled. With Candida antarctica lipase B, results div erged significantly more from an estimated Delta Delta H-R-S(#) than with R hizomucor miehei lipase and cutinase.