C. Orrenius et al., Simple conformation space search protocols for the evaluation of enantioselectivity of lipases, PROTEIN ENG, 11(12), 1998, pp. 1147-1153
Two computational protocols have been evaluated regarding their ability to
reproduce the enthalpic part of lipase enantioselectivity by forcefield pot
ential energy differences (Delta V-R-S(#)). Though the shortcomings of the
approach are numerous, good qualitative results have been obtained here and
elsewhere. The anticipated improvement of quantitative results by use of a
second protocol, which did not impose any atom movement restrictions on th
e total system, was realized only in part. Seemingly, results depended not
only on the design of the computational procedure but also on the enzyme-su
bstrate combination modelled. With Candida antarctica lipase B, results div
erged significantly more from an estimated Delta Delta H-R-S(#) than with R
hizomucor miehei lipase and cutinase.