Stem cells first enter the thymus around the 11(th) to 12(th) days of gesta
tion in BALB/c mouse embryos. The phenotype of these stem cells has been di
fficult to determine because their entry occurs when the thymic primordium
is very small and involves too few stem cells to allow studies by flow cyto
metry. We have been able to microdissect the thymus from embryos during thi
s stage and immunophenotype cells in sections using a sensitive tyramide am
plification system. Our results show that migrant stem cells express CD45,
c-kit, CD44, CD34 and alpha(4) integrin, but other markers such as CD62L, C
D25, Thy-1.2, CD3 epsilon, alpha(5), integrin and RAG-1 expression are dete
cted only after stem cell entry. These results should help to improve the i
solation and characterization of migrant thymic stem cells.