It remains unclear why the majority of parthenogenetic lineages persis
t for only brief periods of evolutionary time. However, by characteriz
ing their patterns of genetic variation, it is possible to gain insigh
ts regarding their evolutionary origin and potential. We examined clon
al diversity patterns in high arctic populations of freshwater ostraco
des with the goal of clarifying the factors promoting genotypic divers
ity. Allozyme electrophoresis showed that the three dominant ostracode
species in high arctic ponds reproduce via apomictic parthenogenesis
that two of these species (Prionocypris glacialis, Candona rectangulat
a) were both highly clonally diverse, and had allozyme phenotypes sugg
estive of polyploidy. Scanning microdensitometry confirmed that many c
lones of P. glacialis at Igloolik were polyploid. In contrast to most
other polyploids, clones of P. glacialis seem to be autopolyploids. Al
though clonal variation in P. glacialis may reflect multiple transitio
ns to parthenogenesis in an undetected sexual population, it seems lik
ely that genomic recombination associated with polyploidy has also pla
yed a role in generating local diversity following the transition to p
arthenogenesis.