The spectral moments of the iterated line graph sequence (ILGS) are defined
and expressed in terms of structural fragments of the molecular graphs, i.
e., embedding frequencies. Several mathematical expressions to find some em
bedding frequencies of trees are given in terms of the spectral moments of
the ILGS. This iterative method was permitted to obtain 12 embedding freque
ncies of alkanes with up to nine carbon atoms. These embedding frequencies
and the spectral moments of the ILGS are used to describe seven important p
hysicochemical properties of alkanes. It was proven that the spectral momen
ts of the ILGS produce high quality QSPR models. This approach showed signi
ficant improvements in the statistical parameters of the regressions in com
parison to the models obtained with the embedding frequencies. Most of the
regression models obtained with the spectral moments of the ILGS can be con
sidered as the best QSPR models reported up to now to describe these physic
ochemical properties of alkanes.