The central nervous system (CNS) is of particular importance in human immun
odeficiency virus type 1 (HIV-1) infection. First, the CNS may be difficult
to access for anti-retroviral treatment and may become a sanctuary for res
idual viruses. Second, HIV-1 infection may lead to AIDS dementia complex (A
DC) culminating in HIV-1 encephalitis. In order to examine the pattern of d
rug resistance and the role of encephalitis in enhancing viral redistributi
on to the CNS, we compared pol gene quasispecies of the spleen and brain in
two patients with and two patients without HIV-1 encephalitis, who had bee
n treated with zidovudine (AZT). Although a variable degree of AZT resistan
ce was noted in both the spleen and brain of all patients, phylogenetic ana
lysis indicated that quasispecies developed rather independently in the sys
temic circulation (spleen) and CNS (brain) of patients without HIV-1 enceph
alitis, while similar pol gene sequences were obtained from the two compart
ments of patients with HIV-1 encephalitis. env gene V3 region of patients w
ith HIV-1 encephalitis showed distinct quasispecies in the spleen and brain
. Our results suggest that HIV-1 redistribution to CNS is more active in ca
ses with encephalitis and that HIV-1 distributed late to CNS grow actively
under certain selective pressure exerted on the V3 region of the env gene.