The crucial step of folding of recombinant proteins presents serious challe
nges to obtaining the native structure. This problem is exemplified by insu
lin-like growth factor (IGF)-I which when refolded in vitro produces the na
tive three-disulfide structure, an alternative structure with mispaired dis
ulfide bonds and other isomeric forms. To investigate this phenomenon we ha
ve examined the refolding properties of an analog of IGF-I which contains a
13-amino acid N-terminal extension and a charge mutation at position 3 (Lo
ng-[Arg(3)]IGF-I). Unlike IGF-I, which yields 45% of the native structure a
nd 24% of the alternative structure when refolded in vitro, Long-[Arg(3)]IG
F-I yields 85% and 10% of these respective forms. To investigate the intera
ctions that affect the refolding of Long-[Arg(3)]IGF-I and IGF-I, we acid-t
rapped folding intermediates and products for inclusion in a kinetic analys
is of refolding. In addition to non-native intermediates, three native-like
intermediates were identified, that appear to have a major role in the in
vitro refolding pathway of Long-[Arg(3)]IGF-I; a single-disulfide Cys(18)-C
ys(61) intermediate, an intermediate with Cys(18)-Cys(61) and Cys(6)-Cys(48
) disulfide bonds and another with Cys(18)-Cys(61) and Cys(47)-Cys(52) disu
lfide bonds. Furthermore, from our kinetic analysis we propose that the Cys
(18)-Cys(61), Cys(6)-Cys(48) intermediate forms the native structure, not b
y the direct formation of the last (Cys(47)-Cys(52)) disulfide bond, but by
rearrangement via the Cys(18)-Cys(61) intermediate and a productive Cys(18
)-Cys(61), Cys(47)-Cys(52) intermediate. In this pathway, the last disulfid
e bond to form involves Cys(6) and Cys(48). Finally, we apply this pathway
to IGF-I and conclude that the divergence in the in vitro folding pathway o
f IGF-I is caused by non-native interactions involving Glu(3) that stabiliz
e the alternative structure. (C) 1999 John Wiley & Sons, Inc.