A microscope set-up and numerical methods are described which enable the me
asurement and reconstruction of three-dimensional nanosecond fluorescence l
ifetime images in every voxel. The frequency domain fluorescence lifetime i
maging microscope (FLIM) utilizes phase detection of high-frequency modulat
ed light by homodyne mixing on a microchannel plate image intensifier. The
output signal at the image intensifier's phosphor screen is integrated on a
charge coupled device camera, A scanning stage is employed to obtain a ser
ies of phase-dependent intensity images at equally separated depths in a sp
ecimen. The Fourier transform of phase-dependent data gives three-dimension
al (3D) images of the Fourier coefficients. These images are deblurred usin
g an Iterative Constrained Tikhonov-Miller (ICTM) algorithm in conjunction
with a measured point spread function, The 3D reconstruction of fluorescenc
e lifetimes are calculated from the deblurred images of the Fourier coeffic
ients. An improved spatial and temporal resolution of fluorescence lifetime
s was obtained using this approach to the reconstruction of simulated 3D FL
IM data. The technique was applied to restore 3D FLIM data of a live cell s
pecimen expressing two green fluorescent protein fusion constructs having d
istinct fluorescence lifetimes which localized to separate cellular compart
ments.