Objective: To identify differences in pathology between the principal clini
cal phenotypes of MS using conventional and magnetization transfer (MT) MRI
. Methods: T1-weighted and T2-weighted images as well as MT scans were obta
ined from 20 controls, 21 patients presenting with clinically isolated synd
romes suggestive of MS, and 93 MS patients with relapsing-remitting seconda
ry progressive, benign, or primary progressive course. Metrics considered:
hypointense T1 and T2 lesion volumes, average lesion MT ratio, average brai
n MT ratio, peak height and position from MT histograms. Results: MS patien
ts had lower MT metrics than controls. Patients with clinically isolated sy
ndromes had MT measures similar to controls, whereas primary progressive MS
patients had lower histogram peak height with normal peak position. Relaps
ing-remitting MS patients had lower MT measures, higher T2 lesion load and
ratio of hypointense T1 to T2 lesion volumes than patients with clinically
isolated syndromes, and lower MT ratio and peak height than benign MS patie
nts. Benign MS patients were similar to controls and patients with clinical
ly isolated syndromes. Secondary progressive MS patients had the lowest MT
measures and highest lesion loads. Conclusions: Pathology in patients with
clinically isolated syndromes is confined to modest tissue damage in the le
sions seen on T2-weighted scans. Severe damage is important for the later d
evelopment of disability. However, microscopic damage in normal-appearing w
hite matter may be a major contributor to disability in primary progressive
MS.