The suprachiasmatic nucleus (SCN) of the hypothalamus, the principal circad
ian pacemaker, is a paired structure with two subdivisions, a ventral core
receiving photic input and a dorsal shell receiving non-photic input. Rhyth
micity is thought to be generated by individual SCN neurons which are coupl
ed to achieve synchrony [D.K. Welsh, D.E. Logothetis, M. Meister, S.M. Repp
ert, Individual neurons dissociated from rat suprachiasmatic nucleus expres
s independently phased circadian firing patterns, Neuron, 14 (1995) 697-706
]. Normally, the core and shell, and the nuclei on each side, act in unison
to transmit rhythmicity to effector systems. It is not known how coupling
between neurons in the two subdivisions, and between the two SCNs, takes pl
ace. In the present study, we analyze the intrinsic, commissural, and effer
ent projections of the SCN using the swine herpesvirus (pseudorabies virus,
PRV) as a tool for transynaptic analysis of circuits and small iontophoret
ic injections of the conventional tracer horseradish peroxidase (HRP) conju
gated to fluorescein. We find that the core and shell each project through
commissural efferents to homologous contralateral areas. The core projects
densely to shell but we find little reciprocal innervation. The two subdivi
sions project to different hypothalamic areas, with the core projecting to
the lateral subparaventricular zone and shell to the dorsomedial hypothalam
ic nucleus and medial subparaventricular zone. These data are the first dem
onstration that connections within the SCN, and from the SCN to effector re
gions, are topographically organized and lend insight into the flow of info
rmation through and out of the pacemaker. (C) 1999 Published by Elsevier Sc
ience B.V. All rights reserved.