G. Hummer et al., ELECTROSTATIC POTENTIALS AND FREE-ENERGIES OF SOLVATION OF POLAR AND CHARGED MOLECULES, JOURNAL OF PHYSICAL CHEMISTRY B, 101(16), 1997, pp. 3017-3020
Theories of solvation free energies often involve electrostatic potent
ials at the position of a solute charge. Simulation calculations that
apply cutoffs and periodic boundary conditions based on molecular cent
ers result in center-dependent contributions to electrostatic energies
due to a systematic sorting of charges in radial shells. This sorting
of charges induces a surface-charge density at the cutoff sphere or s
imulation-box boundary that depends on the choice of molecular centers
. We identify a simple solution that gives correct, center-independent
results, namely the radial integration of charge densities. Our concl
usions are illustrated for a Lennard-Jones solute in water. The presen
t results can affect the parametrization of force fields.