Folding pathway of a lattice model for proteins

Citation
Vs. Pande et Ds. Rokhsar, Folding pathway of a lattice model for proteins, P NAS US, 96(4), 1999, pp. 1273-1278
Citations number
46
Categorie Soggetti
Multidisciplinary
Journal title
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
ISSN journal
00278424 → ACNP
Volume
96
Issue
4
Year of publication
1999
Pages
1273 - 1278
Database
ISI
SICI code
0027-8424(19990216)96:4<1273:FPOALM>2.0.ZU;2-S
Abstract
The folding of a protein-like heteropolymer is studied by using direct simu lation of a lattice model that folds rapidly to a well-defined "native" str ucture. The details of each molecular folding event depend on the random in itial conformation as well as the random thermal fluctuations of the polyme r. By analyzing the statistical properties of hundreds of folding events, a classical folding "pathway" for such a polymer is found that includes part ially folded, on-pathway intermediates that are shown to be metastable equi librium states of the polymer. These results are discussed in the context o f the "classical" and "new" views of folding.