Fragile X syndrome can be caused by lack of expression of the FMR1 gene, wh
ich encodes an RNA binding protein. Extensive alternative splicing of the F
MR1 gene has been observed in human and mice. Five regions of the FMR1 gene
have been reported to be alternatively spliced. To determine whether such
alternative splicing might be developmentally regulated, RT-PCR was used to
analyze poly(A) RNA transcripts of the FMR1 gene in adult and fetal human
brain. A new alternative acceptor site in exon 17 that may lead to a trunca
tion of the last 53 amino acids of the FMR1 protein was described. This acc
eptor site was used in several regions of fetal brain but not in adult cort
ex. The results suggest that alternative splicing of the FMR1 gene may be s
ubject to developmental switching.