The SNARE hypothesis proposes that membrane trafficking specificity is medi
ated by preferential high affinity interactions between particular v (vesic
le membrane)- and t (target membrane)-SNARE combinations. The specificity o
f interactions among a diverse set of SNAREs, however, is unknown. We have
tested the SNARE hypothesis by analyzing potential SNARE complexes between
five proteins of the vesicle-associated membrane protein (VAMP) family, thr
ee members of the synaptosome-associated protein-25 (SNAP-25) family and th
ree members of the syntaxin family, All of the 21 combinations of SNAREs te
sted formed stable complexes, Sixteen were resistant to SDS denaturation, a
nd most complexes thermally denatured between 70 and 90 degrees C, These re
sults suggest that the specificity of membrane fusion is not encoded by the
interactions between SNAREs.