In recent years, mass spectrometry has become the method of choice for iden
tifying small amounts of gel separated proteins. Using high mass accuracy p
eptide mass mapping followed if necessary by nanoelectrospray sequencing, m
ost mammalian proteins can now be identified quickly and sensitively either
in amino acid or in EST sequence databases. These methods are illustrated
here using an ongoing project in the author's laboratory, a mass spectromet
ric screen for new mouse brain receptors and their interaction partners.