A universal procedure to isolate cross-linked peptides has been demonstrate
d. The procedure relies on initially converting the E-amino groups of lysin
e to dimethyl lysine by reductive methylation with sodium cyanoborohydride
and formaldehyde. The lysine-modified protein is proteolytically cleaved an
d the resulting cl-amino groups derivatized with methoxypoly(ethylene glyco
l)(5000) succinyl hydroxy-succinimide. Any unintentional derivatization of
tyrosine side chains can be reversed by incubation under mildly alkaline co
nditions. The cross-linked polypeptides contain two poly(ethylene glycol)(5
000) chains while non-cross-linked peptides contain a single poly(ethylene
glycol)(5000) chain. The two populations of peptides can be separated by ge
l filtration chromatography. This procedure has been shown capable of isola
ting cross-linked peptides using glutathione, lysozyme, chemically cross-li
nked hemoglobin, and neurofibrillary tangles isolated from the brain of a c
ase of Alzheimer's disease.