We estimated apparent species turnover rates and richness of the zooplankto
n annually over a 12-year period in eight lakes in south-central Ontario. A
lthough species richness varied little among years (CV = 13%), apparent spe
cies turnover rates averaged 16%/year. This apparent turnover varied among
years and was influenced by census interval, the number of censuses, the oc
currence of rare species, and lake pH. However, Monte Carlo simulations ind
icated that turnover attributable to sampling error was high. That is, desp
ite high apparent turnover rates, we cannot be certain whether interannual
changes in community composition result from immigration and extinction of
species because sampling error could largely account for all apparent turno
ver. Regardless of the source of apparent turnover (sampling or immigration
s and extinctions), high turnover rates imply that zooplankton biodiversity
can be underestimated in short-term studies because we detect a different
assemblage of species every year. Only one third of the total species pool
for each lake was detected every year. Annual data underestimated long-term
species pools by 33-50%.