This study investigates the potential of microscopic Magnetic Resonance Ima
ging to obtain information for 3D digital atlases of mouse development usin
g fixed samples. Fixed samples allow direct comparison with already publish
ed atlases and provide a testing ground for future in vivo efforts. 3D MR i
mages of mouse embryos (dpc 6.5-16) illustrate that the necessary contrast
and level of detail is available with this technique. Diffusion weighted im
aging, diffusion tensor imaging, and multi-valued data sets are presented a
s examples of uniquely MR methods of obtaining anatomical information. MRI
is performed non-invasively on the intact sample, leaving open the possibil
ity of other manipulations (e.g. classical histology, immunohistochemistry,
in situ hybridization, and in vitro growth for unfixed samples) after cond
ucting the MRI experiment (C) 1999 Elsevier Science Ltd. All rights reserve
d.