This report presents the initial evaluation of the transport and temperatur
e of ocean water passing through Makassar Strait, which is the primary path
way of the Pacific to Indian Ocean transport called the Indonesian through-
flow. The transport was measured as part of the Indonesian USA Arlindo prog
ram, by two moorings deployed within the Labani Channel, a deep constrictio
n near 3 degrees S. Both moorings were operative from December 1996 to Febr
uary 1998; the western most mooring operated until July 1998 The moorings w
ere deployed during a weak La Nina phase. An El Nino condition began in Mar
ch 1997, becoming extreme during the 1997 Summer and Fall, relaxing in earl
y 1998 The Makassar thermocline depth and transport reflect the phases of E
NSO. The thermocline was deeper during La Nina, when the warm pool of the t
ropical Pacific with its relatively high sea level and deep thermocline, is
pressed zip against the Pacific entrance to the Indonesian Seas. A shallow
er thermocline occurs during Fl Nino when the warm pool shifts eastward in
the Pacific Ocean, reducing its accessibility to the Indonesian seas. ENSO
effects are also seen in the velocity data. As Fl Nino takes hold the deepe
r instruments recorded reduced speeds, as the throughflow shoals with the t
hermocline. The 1997 average Makassar Strait throughflow transport is 9.3 S
v (Sv = 10(6) m(3)/sec), assuming the flow in the upper 200 meters equals t
he flow measured by the current meter moored at 200 m. Other models for the
surface flow range from 6.7 Sv (zero surface flow) to 11.3 Sv (thermocline
shear is extrapolated to the sea surface). A comparison of the transports
for the two December to February periods included in the records also refle
cts the ENSO effect: the transport during the El Nino months of December 19
97 to February 1998 average 5 Sv, while the La Nina months of December 1996
to February 1997 averages 12 Sv, a 2.5 fold difference The Makassar transp
orts determined from the Arlindo data are at the higher side of estimates b
ased in Timer Sea and Indian ocean studies.