Allele length variation at 16 microsatellite loci Tvas used to estimate the
phylogeny of 13 out of the 14 species of Darwin's finches. The resulting t
opology was similar to previous phylogenies based on morphological and allo
zyme variation. An unexpected result was that genetic divergence among Gala
pagos Island populations of the warbler finch (Certhidea olivacea) predates
the radiation of all other Darwin's finches. This deep split is surprising
in view of the relatively weak morphological differentiation among Certhid
ea populations and supports the hypothesis that the ancestor of all Darwin'
s finches was phenotypically similar to Certhidea. The results also resolve
a biogeographical problem: the Cocos Island finch evolved after the Galapa
gos finch radiation was under way supporting the hypothesis that this dista
nt island was colonized from the Galapagos Islands. Monophyletic relationsh
ips are supported for both major groups, the ground finches (Geospiza) and
the tr ee finches (Camarhynchus and Cactospiza), although the vegetarian fi
nch (Platyspiza crassirostris) appears to have diverged prior to the separa
tion of ground and tree finches. These results demonstrate the use of micro
satellites for reconstructing phylogenies of closely related species and in
terpreting their evolutionary and biogeographic histories.