Hypospadias, a condition with a frontally placed urethral orifice on the pe
nis, is the most common malformation in males. During fetal development sev
eral components are necessary for normal male genital development. Testoste
rone and dihydrotestosterone act via the androgen receptor but a defective
receptor function results in different degrees of genital malformations. Te
stosterone-5 alpha-reductase converts testosterone to dihydrotestosterone,
which is crucial for normal differentiation, and a total lack of this enzym
e results, in syndromes with hypospadias. The Wilms' tumour 1 (WT1) gene is
expressed in the fetal gonad and genital malformations can occur due to WT
1 gene mutations. These genes are therefore strong candidate genes for hypo
spadias. We have analysed 35 boys with hypopadias and one girl diagnosed as
with complete androgen insensitivity syndrome, using exon by exon polymera
ce chain reaction (PCR) amplification of the AR, WT1 and 5 alpha-reductase
genes and screened for point mutations and performed subsequent DNA sequenc
ing. No mutations in any of these genes were found in the 26 patients with
isolated hypospadias. Two patients with severe hypospadias with cryptorchid
ism were found to carry mutations in the androgen receptor gene. Also the g
irl with clinically diagnosed complete androgen insensitivity was found to
be homozygous for a splice mutation in the 5 alpha-reductase gene. In summa
ry, mutations in the WT1, AR and 5 alpha-reductase genes are not common cau
ses of isolated hypospadias.