The Cretan HLA gene profile has been compared with those of other Mediterra
nean populations in order to provide additional information regarding the h
istory of their origins. The allele frequencies, genetic distances between
populations, relatedness dendrograms and correspondence analyses were calcu
lated. Our results indicate that the Indoeuropean Greeks may be considered
as a Mediterranean population of a more recent origin (after 2000 B.C.), wh
ile all other studied Mediterraneans (including Cretans) belong to an older
substratum which was present in the area since pre-Neolithic times. A sign
ificant Turkish gene flow has not been detected in the Greek or Cretan popu
lations, although Greeks and Turks have two high frequency HLA-DRB-DQB hapl
otypes in common. It is proposed that Imazighen (Caucasoid Berbers living a
t present in the North African coast and Saharan areas) are the remains of
pre-Neolithic Saharan populations which could emigrate northwards between a
bout 8000-6000 B.C,, when desert desiccation began. They also could he part
of the stock that gave rise to Sumerians, Cretans and Iberians; this is su
pported by both linguistic and HLA genetic data.