Bounded degree interval sandwich problems

Citation
H. Kaplan et R. Shamir, Bounded degree interval sandwich problems, ALGORITHMIC, 24(2), 1999, pp. 96-104
Citations number
19
Categorie Soggetti
Engineering Mathematics
Journal title
ALGORITHMICA
ISSN journal
01784617 → ACNP
Volume
24
Issue
2
Year of publication
1999
Pages
96 - 104
Database
ISI
SICI code
0178-4617(199906)24:2<96:BDISP>2.0.ZU;2-A
Abstract
The problems of Interval Sandwich (IS)and Intervalizing Colored Graphs' (IC G) have received a lot of attention recently, due to their applicability to DNA physical mapping problems with ambiguous data. Most of the results obt ained so far on the problems were hardness results. Here we study the probl ems under assumptions of sparseness, which hold in the biological context. We prove that both problems are polynomial when either (1) the input graph degree and the solution graph clique size are bounded, or (2) the solution graph degree is bounded. In particular, this implies that ICC is polynomial on bounded degree graphs for every fixed number of colors, in contrast wit h the recent result of Bodlaender and de Fluiter.