A theoretical method for the rational design of a ''universal'' scorpi
on toxin with a wider spectrum of specificity for K+ channels and a mo
re stable alpha/beta-folding than in its natural homologues is describ
ed. On the basis of the analysis of molecular hydrophobic potentials (
MHP) of the protein spatial structures, structural features for a fami
ly of five short scorpion toxins were revealed. The analysis of the ma
ps of two-dimensional intramolecular MHP contacts allowed the identifi
cation of amino acid residues responsible for the folding of the prote
in and/or for the manifestation of its specific function. The theoreti
cally predicted structure-function roles of the residues were compared
with experimental data on the mutagenesis of charybdotoxin. Based on
the results of MHP calculations and with the theory of protein molecul
ar evolution used as an additional criterion for the selection of muta
tions, the amino acid sequence and the spatial structure of a ''univer
sal'' scorpion toxin were determined.