The genome of the bacterium Borrelia burgdorferi B31, the aetiologic a
gent of Lyme disease, contains a linear chromosome of 910,725 base pai
rs and at least 17 linear and circular plasmids with a combined size o
f more than 533,000 base pairs. The chromosome contains 853 genes enco
ding a basic set of proteins for DNA replication, transcription, trans
lation, solute transport and energy metabolism, but, like Mycoplasma g
enitalium, it contains no genes for cellular biosynthetic reactions. B
ecause B. burgdorferi and M. genitalium are distantly related eubacter
ia, we suggest that their limited metabolic capacities reflect converg
ent evolution by gene loss from more metabolically competent progenito
rs. Of 430 genes on 11 plasmids, most have no known biological functio
n; 39% of plasmid genes are paralogues that form 47 gene families. The
biological significance of the multiple plasmid-encoded genes is not
clear, although they may be involved in antigenic variation or immune
evasion.