Recent comparative studies of morphology and developmental proteins of
stromatal anamorphs suggest that the sclerotial and the substratal st
romatal taxa represent two distinct lineages within the Sclerotiniacea
e, a family of plant-infecting discomycetes (Leotiales). We have studi
ed thirty-one taxa, representing 20 genera and one form genus currentl
y placed in the Sclerotiniaceae along with three outgroup taxa. Analys
es of nuclear rRNA gene sequences, including ca. 575 basepairs from th
e small subunit rDNA, ca. 500 basepairs from the ITS and 5.8S rDNA, an
d ca. 370 basepairs from the large subunit rDNA were used to infer evo
lutionary relationships within the family. The inferred rDNA phylogeny
ny supports and refines the two lineage hypothesis. The sclerotial st
romatal lineage representing genera of the revised, restricted concept
of Sclerotiniaceae includes Botryotinia, Ciboria, Ciborinia, Coprotin
ia, Dumontinia, Encoelia, Grovesinia, Monilinia, Myriosclerotinia, Ovu
linia, Pycnopeziza, Sclerotinia, Stromatinia, and Valdensinia. The sub
stratal stromatal lineage includes Lambertella, Lanzia, Poculum, Rutst
roemia, and Verpatbnia, and are accommodated in the new family Rutstro
emiaceae. The taxa Gloeotinia, Lambertella langei, Piceomphale, and Ch
lorociboria are excluded from the two families on the basis of nr-DNA
data.