S. Stepaniants et al., EXTRACTION OF LIPIDS FROM PHOSPHOLIPID-MEMBRANES BY STEERED MOLECULAR-DYNAMICS, JOURNAL OF MOLECULAR MODELING, 3(12), 1997, pp. 473-475
Steered molecular dynamics (SMD) simulations were employed to investig
ate the extraction step of the lipid head group cleavage reaction by h
uman synovial phospholipase A(2) (PLA(2)) by pulling a lipid molecule
from a monolayer of dilauroyl-phosphatidyl-ethanolamin lipids into the
active site of PLA(2) and into the aqueous phase. The results of the
simulations were compared to draw inferences about the forces that sta
bilize the lipids in the membrane and to understand the mechanism of l
ipid extraction by PLA(2).