1. Autoimmune diseases are common conditions which appear to develop i
n genetically susceptible individuals, with expression of disease bein
g modified by permissive and protective environments, Familial cluster
ing and data from twin studies provided the impetus for the search for
putative loci, Both the candidate gene approach in population-based c
ase-control studies and entire genome screening in families have helpe
d identify susceptibility genes in a number of autoimmune diseases, 2,
After the first genome screen in type 1 (insulin-dependent) diabetes
mellitus it seems likely that most autoimmune diseases are polygenic w
ith no single gene being either necessary or sufficient for disease de
velopment, Of the organ-specific autoimmune diseases, genome screens h
ave now been completed in insulin-dependent diabetes mellitus and mult
iple sclerosis, Furthermore, the clustering of autoimmune diseases wit
hin the same individuals suggests that the same genes may be involved
in the different diseases, This is supported by data showing that both
HLA (human leucocyte antigen:, and CTLA-4 (cytotoxic T-lymphocyte-ass
ociated-4) appear to be involved in the development of insulin-depende
nt diabetes mellitus and Graves' disease, 3, Genome screens have also
been completed in some of the non-organ-specific autoimmune diseases i
ncluding rheumatoid arthritis, inflammatory bowel disease and psoriasi
s, Many candidate genes have also been investigated although these are
predominantly in population-based case-control studies, 4, Substantia
l progress has been made in recent years towards the identification of
susceptibility loci in autoimmune diseases, The inconsistencies seen
between case-control studies may largely he due to genetic mismatching
between cases and controls in small datasets, Family-based associatio
n studies are being increasingly used to confirm genetic linkages and
help with fine mapping strategies, It will, however, require a combina
tion of biology and genetics, as has been necessary with the major his
tocompatibility complex in insulin-dependent diabetes mellitus, to ide
ntify primary aetiological mutations.