The HAP1/Ref-1 (hereafter referred to as HAP1) protein is a nuclear en
zyme that apparently performs two distinct roles in the cellular defen
se against oxidative stress. One well-established role is in the repai
r of a variety of lesions induced in DNA either by spontaneous hydroly
sis or by reactive oxygen species (ROS). This function has been charac
terized in great detail and the roles played by individual active site
amino acid residues have been defined. The second role, which was ide
ntified only relatively recently and is still not characterized in det
ail, is to regulate the DNA binding activity of a group of nuclear fac
tors. This second role proceeds via the modification of the oxidation/
reduction (redox) state of a cysteine residue in the target protein, a
lthough the mechanism by which this is achieved remains to be elucidat
ed. In this article, we shall review the latest knowledge on the relat
ionship between structure and the dual functions of HAP1, and we will
seek to explain in detail the roles played by several individual amino
acid residues in the catalytic function of the HAP1 protein.