NUCLEIC-ACID ANALOGS WITH CONSTRAINT CONFORMATIONAL FLEXIBILITY IN THE SUGAR-PHOSPHATE BACKBONE TRICYCLO-DNA - PART-1 - PREPARATION OF -ETHANO-5',6'-METHANO-BETA-D-RIBOFURANOSYL]THYMINE AND ETHANO-5',6'-METHANO-BETA-D-RIBOFURANOSYL]ADENINE, AND THE CORRESPONDING PHOSPHORAMIDITESFOR OLIGONUCLEOTIDE SYNTHESIS
R. Steffens et C. Leumann, NUCLEIC-ACID ANALOGS WITH CONSTRAINT CONFORMATIONAL FLEXIBILITY IN THE SUGAR-PHOSPHATE BACKBONE TRICYCLO-DNA - PART-1 - PREPARATION OF -ETHANO-5',6'-METHANO-BETA-D-RIBOFURANOSYL]THYMINE AND ETHANO-5',6'-METHANO-BETA-D-RIBOFURANOSYL]ADENINE, AND THE CORRESPONDING PHOSPHORAMIDITESFOR OLIGONUCLEOTIDE SYNTHESIS, Helvetica Chimica Acta, 80(8), 1997, pp. 2426-2439
The synthesis of the tricyclo-deoxynucleoside analogs 1 and 2 and of t
he corresponding cyanoethyl phosphoramidite building blocks 16 and 21
for oligonucleotide synthesis is described. These tricyclic deoxynucle
oside analogs differ from the recently introduced bicyclo-deoxynucleos
ides by an additional cyclopropane unit joined to the centers C(5') an
d C(6') of the latter (see Fig. 1), and thus represent a further membe
r of the class of nucleoside analogs with constraint conformational fl
exibility. The synthesis of the tricyclo-deoxynucleosides was achieved
by a diastereoselective carbene addition to the enantiomerically pure
silyl enol either 8/9 and a Vorbruggen condensation of the tricyclic
carbohydrate unit 10/11 with in situ persilylated thymine and N-6-benz
oyladenine. Selective tritylation of the tertiary OH-C(5') and phosphi
nylation of OH-C(3') of 1 and 2 afforded the corresponding phosphorami
dites 16 and 21. The 'exo'-configuration of the newly introduced cyclo
propane ring was confirmed by H-1-NMR-NOE spectroscopy. The alpha-D- a
nd beta-D-configuration at C(1') of the nucleoside analogs 1 and 14 (2
and 19, resp.) was assigned by H-1-NMR-NOE spectroscopy and NOESY. Mo
deling studies of the beta-D-anomeric nucleoside analog 1 indicate a p
reference for the l-endo-conformation of the furanose ring and a parti
al correction of the torsion angle gamma to the anti-clinal range comp
ared to bicyclo-deoxynucleosides.