Microsporidia, which are members of the phylum Microspora, are increas
ingly recognized as causing opportunistic infections in persons with i
mmunodeficiency (e.g., AIDS). Diarrhea is the predominant clinical sig
n associated with infections by two Microsporidia, namely Enterocytozo
on bieneusi and Encephalitozoon intestinalis (which was formerly named
Septata intestinalis). Prevalence rates of microsporidiosis in person
s with AIDS and chronic diarrhea range fron 7 to 50%. Transmission ele
ctron microscopy has been the gold standard by which to diagnose micro
sporidiosis and requires observing a polar filament which is the struc
ture distinguishing Microsporidia from other organisms. Transmission e
lectron microscopy is difficult, time-consuming, costly, relatively in
sensitive, and requires a great deal of expertise. As such, histochemi
cal methods have been developed and improved for detecting Microsporid
ia. Diagnoses from stool specimens or enteric fluids can be made using
the chitin-staining fluorochromes (e.g., Calcofluor White) and the mo
dified trichrome stain which are highly sensitive, particularly when b
oth are used. Immunofluorescent antibody staining methods are being de
veloped to improve specificity, but reagents are not yet commercially
available. Microsporidia can be detected most readily in tissue biopsi
es by Gram stain, Giemsa stain, or immunofluorescent antibody. Polymer
ase chain reaction methods are in their infancy for application, but s
hould prove to be particularly sensitive and specific in the future.