Numerous studies aimed at the identification of chromosomal regions th
at are frequently deleted in specific tumor types have pointed to the
location and involvement of specific tumor suppressor genes. Previous
studies of loss of heterozygosity (LOH) among thyroid tumors have reve
aled frequent allelic deletions at a few chromosomal regions. A system
atic genome-wide examination of LOH in a substantial number of follicu
lar carcinomas, however, has not been performed previously. We assesse
d LOH at polymorphic markers from each nonacrocentric autosomal arm in
a panel of 28 follicular thyroid carcinoma tumor and normal pairs. In
contrast to the results of previous allelotype studies, we found high
rates of LOH at multiple chromosomal regions. The highest rate of los
s in our study was at 2p (50.0%) and 2q (50.0%), and the mean rate of
LOH was 20.4%. Marked genetic instability in a subset of tumors was de
monstrated by high fractional allelic loss, which accounted for more t
han 80% of observed LOH in this study. High fractional allelic loss wa
s significantly associated with oxyphilic features and poor differenti
ation of these tumors. Our data provide evidence of a prevalent phenot
ype of nondisjunctional whole chromosomal loss in follicular thyroid c
arcinomas. (C) 1997 Wiley-Liss, Inc.