Chlorarachniophyte algae contain a complex, multi-membraned chloroplas
t derived from the endosymbiosis of a eukaryotic alga. Phylogenetic tr
ees indicate that the host is closely related to filose amoebae and sa
rcomonads whereas the endosymbiont is most closely related to green al
gae. The endosymbiont is greatly reduced retaining only the plastid, p
lasmamembrane, a modicum of cytoplasm, and the nucleus. The vestigial
nucleus of the endosymbiont, called the nucleomorph, contains three sm
all linear chromosomes with a haploid genome size of 380 kb and is the
smallest known eukaryotic genome. The overall gene organisation of th
e nucleomorph genome is extraordinarily compact making this a unique m
odel for eukaryotic genomics.