O. Berger et al., MOLECULAR-DYNAMICS SIMULATIONS OF A FLUID BILAYER OF DIPALMITOYLPHOSPHATIDYLCHOLINE AT FULL HYDRATION, CONSTANT-PRESSURE, AND CONSTANT-TEMPERATURE, Biophysical journal, 72(5), 1997, pp. 2002-2013
Molecular dynamics simulations of 500 ps were performed on a system co
nsisting of a bilayer of 64 molecules of the lipid dipalmitoylphosphat
idylcholine and 23 water molecules per lipid at an isotropic pressure
of 1 atm and 50 degrees C. Special attention was devoted to reproduce
the correct density of the lipid, because this quantity is known exper
imentally with a precision better than 1%. For this purpose, the Lenna
rd-Jones parameters of the hydrocarbon chains were adjusted by simulat
ing a system consisting of 128 pentadecane molecules and varying the L
ennard-Jones parameters until the experimental density and heat of vap
orization were obtained. With these parameters the lipid density resul
ted in perfect agreement with the experimental density. The orientatio
nal order parameter of the hydrocarbon chains agreed perfectly well wi
th the experimental values, which, because of its correlation with the
area per lipid, makes it possible to give a proper estimate of the ar
ea per lipid of 0.61 +/- 0.01 nm(2).